Hi Jeff, this was a known bug in 5.0 and there are fixes on the web (release notes), just download the recon all from there (and did you grab the robust template binary)?.
http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes Best, Martin On Mon, 2011-08-08 at 17:43 -1000, Jeff Sadino wrote: > Hello Experts, > > > I am using fs 5.0.0. My naming convention is similar to 100001_S01 > and 100001_S02 for subject, and then 100001 for the base. Now when I > process the runs longitudinally, I get: ERROR: longitudinal base ID > cannot be the same as a timepoint. I believe this is because of line > 4845 in recon-all: grep $longbaseid > ${longbasedir}/${BaseSubjsListFname} >& /dev/null. I can just as > easily cut out this part of the code, or I could manipulate the > base-tps file, or rename the base folder. But I do not know if there > are other spots in the code that rely on the > original naming conventions. Can anyone recommend one approach over > the other? > > > Thank you very much, > Jeff Sadino > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
