Hi, is this true for FSFAST vs. 5.1 as well? -Tapsya > > You will need the AFNI 3dvolreg command. This is the only AFNI command > you'll need, but you may need to download and install AFNI to get it. > > doug > > Eiran Vadim Harel wrote: >> Hi, >> I am using stable5.0-env. >> I have run the pre[processing command: >> >> preproc-sess -s 1411_MC -surface fsaverage lhrh -mni305 -fwhm 5 -per-run >> >> I got this ERROR message: >> >> /autofs/space/shimshon_002/users/eiran/contproc/1411_MC >> RunList: 005 006 007 >> ------- ************************** ----------- >> ------- Motion Correcting Run 005 ----------- >> ------- ************************** ----------- >> sess = 1411_MC >> Fri Aug 5 11:51:17 EDT 2011 >> mc-afni2 --i 005/f.nii --t 005/template.nii --o 005/fmcpr.nii --mcdat >> 005/fmcpr.mcdat >> ERROR: cannot find AFNI command 3dvolreg >> >> >> My PROJECT DIR: /space/shimshon/2/users/eiran/contproc >> SUBJECTS_DIR: /space/shimshon/2/users/eiran/subjects >> >> Is there a way to solve it? >> Thanks, >> Eiran >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >
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