Hi Anastasia, Having the same issue, I was wondering if it's possible to recompile only tracula from the source code ? If yes could you give some hints ?
Thanks a lot, Dr. David Coynel Division of Cognitive Neuroscience University of Basel Birmannsgasse 8 4055 Basel - Switzerland david.coy...@unibas.ch tel: +41(0)612.670.240 Am 22.07.2011 um 16:36 schrieb Anastasia Yendiki: > > Hi Kevin - This is unfortunately a problem with the macos freesurfer > distribution, which is still built on leopard instead of snow leopard b/c of > compatibility issues with some libraries unrelated to tracula. It's possible > to compile tracula on snow leopard (in fact that's what I use) but you'd have > to download the source code. > > Since several people have written about this by now, I'm considering > something that'd be less of a pain for users, which is to create a tarball > with only the tracula executables compiled on snow leopard and make it > available. > > a.y > > On Fri, 22 Jul 2011, Dabbs (Kevin) wrote: > >> Freesurfer users, >> I have ran into a malloc error running trac-all. Looks like the same error >> that Stijn posted to the list on 17 Jun 2011. I did not see a solution >> posted. It occurs in dmr_train using trac-all -prep –c dmrirc.txt. Also >> tried using trac-all –prior –c dmrirc.txt with the same results. Reset the >> tcsh limits for datasize, …. >> ********* >> Loading segmentation from >> /Applications/freesurfer5_1/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz >> Loading cortex mask from >> /Applications/freesurfer5_1/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz >> dmri_train(54615) malloc: *** mmap(size=159744) failed (error code=12) >> *** error: can't allocate region >> *** set a breakpoint in malloc_error_break to debug >> MRIalloc(218, 182, 182): could not allocate 158704 bytes for 26th slice >> Cannot allocate memory >> ********** >> My system >> Model Name: Mac Pro >> Model Identifier: MacPro3,1 >> Processor Name: Quad-Core Intel Xeon >> Processor Speed: 2.8 GHz >> Number Of Processors: 2 >> Total Number Of Cores: 8 >> L2 Cache (per processor): 12 MB >> Memory: 18 GB >> System Version: Mac OS X 10.5.8 >> Thanks for any advice or suggestions! >> Kevin Dabbs >> SMPH/Neurology UW-Madison > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
