Thank you Douglas for your suggestions! If I use mris_anatomical_stats, would I perform the following procedure?
- To run "mri_label2label" to all the subjects of my comparison - To run mris_anatomical_stats. I would obtain the volume of the labels in each subject - Mean volume of all the subjects I have tried to map the label to fsaverage and ru run mris_anatommical_stats but I have an error and I am not sure if it is correct. Thanks again, Yolanda 2011/7/26 Douglas N Greve <gr...@nmr.mgh.harvard.edu> > Hi Yolanda, don't use thmax (it will exclude everything with a sig>7 -- not > what you want I assume). That command otherwise looks right, but it won't > correct for multiple comparisons. You can run mris_anatomical_stats on the > output label to give you the stats you want. > > doug > > > Yolanda Vives wrote: > >> Dear freesurfers, >> >> I would like to obtain the cluster size (in mm3) and coordinates of the >> maxima of a cortical volume comparison using mri_surfcluster. >> >> mri_surfcluster --in $PATH/control_cronic_dones_** >> right_volume/rh-Diff-control-**cronic-Intercept-volume/sig.**mgh --hemi >> rh --subject fsaverage --thmin 2 --thmax 7 --sign pos --surf pial >> --no-adjust --o ./concro --ocn ./cluster_number --olab ./grouplabel_concro >> --sd $SUBJ_DIR --sum ./concro_sum >> >> Would it be correct. >> >> Regarding the results that I obtain, I have some questions: >> >> - Which surface do I have to load? pial, orig? >> - In the summary file, the cluster size is given in mm2, is it possible to >> obtain it in mm3 (I am analysing cortical volume)? >> >> Thank you for your help, >> Yolanda >> >> >> ------------------------------**------------------------------** >> ------------ >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: > surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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