I suspect that your subject directory/file names will match some
pattern. You can use combination of a loop and shell "ls" command to
cycle through all the subjects matching provided pattern. For example
if you have data in directories you would do something line this:
#!/bin/tcsh
cd /path/to/native/files
for x in `ls -dA1 name_pattern_*`;
do
mkdir -p $SUBJECTS_DIR/${x}/mri/orig
$FREESURFER_HOME/bin/mri_convert ${x}.nii.gz $SUBJECTS_DIR/${x}/mri/orig/001.mgz
done
If all files are in the same directory substitute '-dA1' for "-A1" and
it should work. Note this assumes that you have nifti files, for DICOM
you will need to modify it further.
Cheers,
Jacek
2011/7/15 汪贵宏 <wgh0...@126.com>:
> Hi Bruce,
>
> In our research,if there are 100 subjects,how can I process these data
> easily.For example，when I want to compare their thickness's difference，at
> first，I should do
> " mri_convert bert.nii bert.nii.gz",but when there are too many subjects,is
> there a way to do all of these 100 subjects at the same time?
>
> Many thanks,
> Wang
>
>
>
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