Yep, use tkregister2 --s subject --fstal there are instructions in the trouble shooting tutorial on the wiki. doug
Carolina Valencia wrote: > Hi FSexperts, > > I have a case of a child with /Hydrocephalus and cortical dysplasia, > the patient has a subcutaneous ventriculo-peritoneal shunt that > produces an artifice in all MRI sequences, I try to recon-all but it > exit with ERROR/ > #-------------------------------------------- > #@# Talairach Failure Detection Thu Jul 7 11:03:21 COT 2011 > /home/cvalencia/freesurfer/subjects/volumetria/hptu_vol04/hptu_vol04/mri > > talairach_afd -T 0.005 -xfm transforms/talairach.xfm > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) > Linux cvalencia-Precision-WorkStation-T3400 2.6.35-30-generic-pae > #54-Ubuntu SMP Tue Jun 7 20:28:33 UTC 2011 i686 GNU/Linux > > recon-all -s hptu_vol04 exited with ERRORS at Thu Jul 7 11:03:21 COT 2011 > > is possible to process it in automated fashion? > > Thanks, > > Best regards, > > Carolina > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
