Hi Paola, I can't tell from the output what went wrong. One thing that may be going wrong is that you might not have the matlab binary in your path. From a terminal, type 'which matlab' (no quotes). Also, please don't send logs and error messages in rtf or doc formats -- it makes it harder for us to read! thanks
doug Paola Binda wrote: > > Hi all > I'm having trouble with the interface between freesurfer and matlab too > in my case, running mkcontrast does not open matlab and eventually > generates an error > > Any help to work around this problem would be very much appreciated > > I'm running freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 on a Mac > OS X 10.6.8 (please see details of the system/command/error message in > the rtf file in attach) > I've just installed Freesurfer and this is the first time I try this > command > > > Paola > > ------------------------------------------------------------------------ > > > >> >> >> What is your platform and what version of FS are you using? >> >> doug >> >> On 12/15/10 2:42 PM, Katherine Sledge Moore wrote: >> > I am having trouble with the interface between freesurfer and >> matlab. When I >> > run mkcontrast-sess and selxavg3-sess, matlab opens, but nothing >> happens (the >> > script does not finish.) When I force it to quit, I get the error >> "-display: >> > Command not found." In both mkcontrast and selxavg3-sess, the >> command to call >> > matlab is something along the lines of "matlab -display iconic". >> Any thoughts >> > as to why the "-display iconic" part is not being interpreted? >> > >> > Katherine Sledge Moore >> > Postdoctoral Associate >> > Visual Cognitive Neuroscience Laboratory >> > Yale University >> > >> http://camplab.psych.yale.edu/ >> >> > >> http://pantheon.yale.edu/~khs8 <http://pantheon.yale.edu/%7Ekhs8> >> >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> >> http://www.partners.org/complianceline >> . If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
