Hi all I'm having trouble with the interface between freesurfer and matlab too in my case, running mkcontrast does not open matlab and eventually generates an error Any help to work around this problem would be very much appreciated I'm running freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 on a Mac OS X 10.6.8 (please see details of the system/command/error message in the rtf file in attach) I've just installed Freesurfer and this is the first time I try this command Paola |
{\rtf1\ansi\ansicpg1252\cocoartf1038\cocoasubrtf360
{\fonttbl\f0\fswiss\fcharset0 Helvetica;}
{\colortbl;\red255\green255\blue255;}
\margl1440\margr1440\vieww9000\viewh8400\viewkind0
\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\ql\qnatural\pardirnatural\f0\fs24 \cf0 \ Mac OS X 10.6.8\ -------- freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0 --------\ Setting up environment for FreeSurfer/FS-FAST (and FSL)\ FREESURFER_HOME /Applications/freesurfer\ FSFAST_HOME /Applications/freesurfer/fsfast\ FSF_OUTPUT_FORMAT nii.gz\ SUBJECTS_DIR /Applications/freesurfer/subjects\ MNI_DIR /Applications/freesurfer/mni\ FSL_DIR /usr/local/fsl\ \ OUTPUT OF which mkcontrast-sess\ /Applications/freesurfer/fsfast/bin/mkcontrast-sess\ \ CURRENT DIRECTORY\ /Users/paolabinda/FreeSurfer_work/AttLoc/Analysis\ \ EXACT COMMAND LINE\ \pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\ql\qnatural\pardirnatural \cf0 mkcontrast-sess -df sessdir -sf s1 -analysis attloc.main.localization.sm0.lh -contrast main.loc.LvsR.lh -a 1 -c 2\ \ \ OUTPUT MESSAGE \ \'85\ ERROR running mkcontrast\ mkcontrast -anadir attloc.main.localization.sm0.lh -wcond 1.00000000000000000000 -1.00000000000000000000 0 -sumconds -o attloc.main.localization.sm0.lh/main.loc.LvsR.lh.mat -wdelay 1 -no-octave\ Wed Jul 6 18:19:57 PDT 2011\ \ LOG FILE\ mkcontrast-sess log file\ $Id: mkcontrast-sess,v 1.17 2011/03/15 16:50:48 greve Exp $\ $0\ Darwin d-69-91-153-108.dhcp4.washington.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386\ Wed Jul 6 18:19:56 PDT 2011\ -df sessdir -sf s1 -analysis attloc.main.localization.sm0.lh -contrast main.loc.LvsR.lh -a 1 -c 2\ /Applications/freesurfer/fsfast/bin/mkcontrast\ Condition Weights: 1.00000000000000000000 -1.00000000000000000000 0\ Wed Jul 6 18:19:57 PDT 2011\ \ \ OUTPUT OF BUGR\ \ FREESURFER_HOME: /Applications/freesurfer\ \ Build stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0\ \ Kernel info: Darwin 10.8.0 i386\ \ \ \ \ }
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