Wayne, You can try to rerun the surface reconstruction (recon-all -autorecon2-wm -randomness, in order to change the number of vertices, and then recon-all -autorecon3) and then rerun the lgi process (recon-all -lgi), this should solve the problem. If not, please let me know.
Marie On Jun 27, 2011, at 10:32 PM, Wayne Su wrote: > Hello, > > I am using FS 5.1 to measure lGI (local Gyrification Index). Only one > particular scan failed. Here are some messages: > > “... remeasuring lGI value for vertex iV = 65101. It may take a few minutes. > WARNING -- Problem for vertex iV = 65101, lGI value is aberrantly high > (lGI=56.5472)... > ...lGI computation will be stopped. This may be caused by topological > defects, check mris_euler_number on the pial surface.” > > > “mris_euler_number ../surf/lh.orig \n > euler # = v-e+f = 2g-2: 143555 - 430659 + 287106 = 2 --> 0 holes > F =2V-4: 287106 = 287110-4 (0) > 2E=3F: 861318 = 861318 (0) > > total defect index = 0” > > “mris_euler_number ./lh.pial-outer-smoothed > ================= > euler # = v-e+f = 2g-2: 65560 - 196674 + 131116 = 2 --> 0 holes > F =2V-4: 131116 = 131120-4 (0) > 2E=3F: 393348 = 393348 (0) > > total defect index = 0” > > > I re-run the recon-all -s 01_097_Y0 -hemi lh -autorecon2 –autorecon3 > and recon-all -s 01_097_Y0 -localGI > > It stopped at the same vertex. > > Could you please let me know anything I can do to overcome this issue? Thank > you very much. > > Wayne > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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