glad to hear it
Bruce
On Thu, 23 Jun 2011, G. William Chapman IV wrote:
I'm not sure why the PD would be two frames -- the files were downloaded as
dcm from the ADNI database. After looking through them though, there was a
repeat of the slices, so I removed the second frame. Seems to have solved
the problem, as the reslice is working now.
On Thu, Jun 23, 2011 at 09:28, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
p.s. also, why are you specifying --like and -rl?
On Thu, 23 Jun 2011, G. William Chapman IV wrote:
The files have
beendropped.https://www.nmr.mgh.harvard.edu/facility/filedrop/showgroup/24787/1
/d2a16267b417faa9da6f7cff3c36228a
On Wed, Jun 22, 2011 at 13:21, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
if you file drop these volumes we'll take a look
Bruce
On Wed, 22 Jun 2011, G. William Chapman IV wrote:
Hello all,
I'm attempting to use mri_convert in order to match
the slice size and
thickness of T2 and PD images to the Freesurfer T1
images, after converting
the norm.mgz and the T2/PD images to .nii.gz. For the
T2 I'm using:
mri_convert ${SUBJECT}/T2/T2.nii.gz -rl
${SUBJECT}/mri/norm.nii.gz --like
${SUBJECT}/mri/norm.nii.gz ${SUBJECT}/T2/T2_like_norm.nii.gz
And having no problems. However, using the same code
for the PD images I'm
arriving at a bus error each time (output below). Is
there any possible work
around for this?
(freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0)
---
bash-3.2$ mri_convert ${SUBJECT}/PD/PD.nii.gz -rl
${SUBJECT}/mri/norm.nii.gz
--like ${SUBJECT}/mri/norm.nii.gz
${SUBJECT}/PD/PD_like_norm.nii.gz
mri_convert 003_S_0907_M00/PD/PD.nii.gz -rl
003_S_0907_M00/mri/norm.nii.gz
--like 003_S_0907_M00/mri/norm.nii.gz
003_S_0907_M00/PD/PD_like_norm.nii.gz
$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50
greve Exp $
reading from 003_S_0907_M00/PD/PD.nii.gz...
TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 2.05103e-10, 0)
j_ras = (-2.05103e-10, -1, 0)
k_ras = (-0, -0, 1)
reading template info from volume
003_S_0907_M00/mri/norm.nii.gz...
INFO: transform src into the like-volume:
003_S_0907_M00/mri/norm.nii.gz
Bus error
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