that's weird. I'm not sure what to do. The log says that it is creating T1.mgz and not t1.mgz. Can you try this:
cd $SUBJECTS_DIR/subject/mri mri_normalize -g 1 nu.mgz T1.mgz this should create T1.mgz and not t1.mgz doug tulu wrote: > Dear FS experts and Prof. Douglas N Greve, > Here is log file. I work on other machine under CentOS 5 and FS 4.5 version > but I copy the result from this machine to other machine and find it only > have t1.mgz rather than T1.mgz. > I guess is the language system problem ? > Finally I use a short matlab script to change t1.mgz name as T1.mgz. > > Thanks in advance > Best > JLH > > -----Original Message----- > From: Douglas N Greve [mailto:gr...@nmr.mgh.harvard.edu] > Sent: Monday, June 13, 2011 11:01 PM > To: t...@ms36.hinet.net > Cc: freesurfer > Subject: Re: [Freesurfer] make_average_subject error in T1.mgz and t1.mgz > > Do you mean your individual subject after running through FS has a file > called t1.mgz and not T1.mgz? Something is definitely wrong there. Can > you send the log file? > doug > > t...@ms36.hinet.net wrote: > >> Dear FS experts, >> I use FS5.1 and previous data run on other machine. When I try to >> make_average_subjects program, I get error message that it can not get >> T1.mgz data from subject folder. When I check my dataset, actually it >> has t1.mgz rather than T1.mgz. how could I change the setting from >> T1.mgz to t1.mgz >> thanks help >> JLH >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
