Dear Doug Im using : mri_surf2surf --sval $PATH/image.mgh --tval $PATH/image.nii --reshape --s my_avg_subject --hemi lh
and the nii output image still seems to be a not valit image, am I missign something? Gabriel > Date: Fri, 27 May 2011 12:53:53 -0400 > From: gr...@nmr.mgh.harvard.edu > To: gabriel...@hotmail.com > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mgh conversion > > Nifti can only handle 32k elements in any dimension. This is a problem > for surfaces when they have upwards of 100k vertices. For our average > subject (fsaverage and derivatives), this problem is solved by reshaping > the number of vertices to be 27307x6=163842. If you are working with > fsaverage, this should happen automatically (but might not for older FS > versions). You can try converting to nifti using mri_surf2surf which > offers a "--reshape" option. > > doug > > Gabriel Go.Es. wrote: > > Dear freesurfers > > > > I want to convert an .mgh image to NIfTY format, but even when the > > conversion using "mri_convert" seems to be ok, when I try to open the > > nii, an error message appears "image doesn't appear to be a valid 2D > > or 3D image", there is any other way to convert an mgh image to nii? > > > > In other cases when I tryed to convert other mgh's cointaining > > clusters extracted with matlab but saved with the same matrix header > > as "sig.mgh", FS says that nrows in volume exceeds 32768, and does not > > make the conversion? > > Any ideas? > > > > Thanks in advanced, > > Gabriel. > > ------------------------------------------------------------------------ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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