can you send us the command line you are using? Bruce On Fri, 13 May 2011, Vanessa Lim wrote:
> Hi, > > > > I have files from Siemen's Skyra which I have used MRI_Convert to nii > > I have tried using just the dicom files as well as changing the files to > *.nii.gz but I still get the error > > corRead(): can't open file > /home/virtualuser/apps/freesurfer/subjects/SPARSEG/COR-.info > $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ > > I get files in G2 but there is nothing in the mri/orig > > I am following > http://surfer.nmr.mgh.harvard.edu/fswiki/RecommendedReconstruction > > as I am completely new to freesurfer. I'm using a virtual machine on Vista; > Ubantu. > > > > Many thanks! > > Regards, > > Vanessa > > > > Error below: > > FreeSurfer:~/apps/freesurfer/subjects/GrossNii> recon-all -i > ~/apps/freesurfer/subjects/SPARSEG -subjid G2 > Subject Stamp: freesurfer-Linux-centos4-stable-pub-v5.0.0 > Current Stamp: freesurfer-Linux-centos4-stable-pub-v5.0.0 > INFO: SUBJECTS_DIR is /home/virtualuser/apps/freesurfer/subjects > Actual FREESURFER_HOME /home/virtualuser/apps/freesurfer > Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC > 2009 i686 GNU/Linux > /home/virtualuser/apps/freesurfer/subjects/G2 > > mri_convert /home/virtualuser/apps/freesurfer/subjects/SPARSEG > /home/virtualuser/apps/freesurfer/subjects/G2/mri/orig/001.mgz > > mri_convert /home/virtualuser/apps/freesurfer/subjects/SPARSEG > /home/virtualuser/apps/freesurfer/subjects/G2/mri/orig/001.mgz > corRead(): can't open file > /home/virtualuser/apps/freesurfer/subjects/SPARSEG/COR-.info > $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ > reading from /home/virtualuser/apps/freesurfer/subjects/SPARSEG... > Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC > 2009 i686 GNU/Linux > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
