Hi Michelle, those aren't necessarily problems. We see this in lower quality scans where you get little 1d protruberances that have very small radius of curvature. Have you checked the ?h.white surface in those locations? At the end of the day, that's what you really care about. If you don't like them in your overlay for visualization purposes you could smooth the curvature a bit (tksurfer tools->surface->smooth curvature
cheers Bruce On Thu, 12 May 2011, Michelle Umali wrote: > Hi Bruce and others, > I've had trouble replying to your email requesting that I send an image > (message got rejected). > > I am attaching a single image with a slide showing my problems. I would like > to submit one brainmask snapshot showing obscured parietal lobe issues. > Please let me know when I can do that... > > Many thanks. > Michelle > > Quoting Bruce Fischl <fis...@nmr.mgh.harvard.edu>: > >> Hi Michelle >> Can you send us an image with arrows to point out what you think are >> problems? >> Cheers >> Bruce >> >> >> On May 9, 2011, at 11:51 PM, Michelle Umali <m...@columbia.edu> wrote: >> >>> Dear Freesurfers, >>> I've noticed some problems in some inflated brains with the curvature >>> displayed that I know will require manual intervention: >>> >>> -random spots of abnormally intense green or very intense red >>> -tiny protrusions >>> -falx cerebri obscuring parietal region >>> -subcallosal splotches of red-green >>> >>> I've been reading the troubleshooting webpages, but I am not sure what >>> is causing the above issues. >>> >>> Any suggestions on the appropriate edits would be greatly appreciated. >>> >>> Thanks. >>> Michelle >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
