Is this functional (FSFAST) data? Then you can use mri_vol2vol, something like:
mri_vol2vol --mov fsfast.mni305.nii.gz \ --targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \ --reg $FREESURFER_HOME/subjects/fsaverage/mri.2mm/reg.2mm.mni152.dat --o output.nii.gz I don't know how the run the FSL nonlinear warp. doug Gabriel A. Tobon wrote: > Hello Freesurfers, > > Is there any way to run random effects analysis using mri_glmfit with > registration to MNI152 instead of MNI309? Also, is there a way to use > a nonlinear warp instead of an affine transformation (for example by > using "applywarp" from FSL) to bring data to a common space for random > effects analysis using mri_glmfit? > > Thank you! > Gabriel > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
