Hi Marie, do you have an anatomical MRI? That is what you need to give recon-all.
cheers Bruce On Wed, 30 Mar 2011, Marie ERESUE wrote: > > Hi Bruce, > thank you for your answer. I did recon-all with my CT and SPECT > recon-all -i home/pmod/Bureau/freesurfer/subjects/... -subjid ... > > and then, I tried to register CT with MNI with bbregister: > bbregister --mov MNI152_T1_2mm_brainnii --s image1_CT/ --init-fsl --reg > ct_recal_mni.dat --bold > > But I have an error: mri/brainmask not found into CT folder, like if > recon-all didn't work. > > best regards, > > Marie > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
