Hi Gonzalo mri_cc computes the optimal rotation. If the patient's head is not straight this can make it look like an inconsistent labeling, but in 3d it usually is correct.
Bruce On Tue, 15 Mar 2011, Gonzalo Rojas Costa wrote: > Hi: > > The CC_Posterior, CC_Central, etc, volumes in "aseg.mgz" are the complete > CC volume, or it includes only some sagital slices ?... > > How can I meassure the CC volume for some sagital slices only (5 in total > for example) ?... When I tried using "mri_cc" I got an error (for example) in > the case that the patient is slightly rotated (freesurfer segments only one > section of the CC as CC and the other as WM)... > > Sincerely, > > > > Gonzalo Rojas Costa > Laboratory for Advanced Medical Image Processing > Department of Radiology > Las Condes Clinic > Lo Fontecilla 441, Las Condes, Santiago, Chile. > Tel: 56-2-2105170 > Cel: 56-9-97771785 > www.clc.cl > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
