In tksurfer, try going to Tools->Label->Threshold Selected Label. Then choose a threshold between 0 and 1. doug
Thesen, Thomas wrote: > > Dear Freesurfer List, > > I ran the script for predicting V1 location on the surface: > > http://surfer.nmr.mgh.harvard.edu/fswiki/V1 > > According to the paper, the output should be a probability map, but > the script only seems to produce a label file: > $SUBJECT_DIR/label/?h.v1.prob.label . > > When I load this file (it only loads as ‘label’) it is a binary label, > with no probability values associated with it. That means it is a > pretty generous description of predicted V1. > > How can I get probability values and trim it to, let’s say, >80% > probability? > > Thanks for your input. > > Thomas > > ------------------------------------------------------------ > This email message, including any attachments, is for the sole use of > the intended recipient(s) and may contain information that is > proprietary, confidential, and exempt from disclosure under applicable > law. Any unauthorized review, use, disclosure, or distribution is > prohibited. If you have received this email in error please notify the > sender by return email and delete the original message. Please note, > the recipient should check this email and any attachments for the > presence of viruses. The organization accepts no liability for any > damage caused by any virus transmitted by this email. > ================================= > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
