Hi Evan can you send some coronal images showing where it is slanted? I also don't understand why you can't use the aseg. What resolution are you acquiring the data at? cheers Bruce On Tue, 15 Feb 2011, Evan Luther wrote:
> Hello All! > > I am currently trying to create a high resolution anatomy by manually > changing some parameters throughout the recon-all process. I have currently > hit a road block at the fill portion of the recon-all process. So far I have > tried this high resolution reconstruction on two subject's anatomies. In > both subjects I used the flag -noaseg as well as seed points for the CC, > pons, left hemisphere, and right hemisphere at the fill step because > otherwise the fill command would use the aseg file for seed points and > subsequently the hemispheres would not get separated at all. > > Now here is the kicker, in one subject's anatomy this worked fine. It split > the hemispheres down the middle without a problem. However on the other > subject the cut between the hemispheres is slanted, assigning portions of > the right hemisphere to the left. I do not know how to correct this problem. > I have tried using different seed points and not inputting seed points and > this has yielded the same results. Any suggestion? > > thank you, > > Evan Luther > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
