When you say the original T1, do you mean the data directly from the dicom files? FS analysis is generally done in our "conformed" space (1mm isotropic, 256^3). One of those volumes is called "T1" and one is called "orig" -- this understandably confuses a lot of newbies (and oldbies).
doug Jennifer Evans wrote: > > The original T1 to start with would be good. I did try: > > bbregister --s $SUBJ --mov T1.mgz --reg register.dat --t1 --init-header > > but I can't figure out whether I've got a problem viewing it or with > the commands. > > Thanks, > Jen > > On 02/14/2011 05:49 PM, Douglas N Greve wrote: >> What volume do you want to project them to? >> doug >> >> Jennifer Evans wrote: >>> Hi there, >>> >>> I'm not really familar with freesurfer and am missing the step on what >>> to register to create the register.dat file required to use >>> mri_label2vol to convert the probabilistic V1 label file outputs from a >>> single subject to a volume. I thought the labels are already on the >>> surface/volume and registered... but using an identity matrix isn't >>> right. Which volumes/command create/s the right register.dat file? I >>> rooted around in the wiki but couldn't figure out the right >>> relationships. >>> >>> Thanks, >>> Jen >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
