For the permutation sim, the fwhm should be set to 0. Why are you not using mri_glmfit-sim? I would strongly recommend it as that will make sure that all the arguments are correct.
doug Rafa x wrote: > Dear Freesurfers, > In Freesurfer v5.0 when I try to run the command: > > mri_glmfit --surf CNTRL_MCI_RAFA_average lh --C contrast.mat --fsgd > fsgd.txt dods --mask lh.fsgd_subj/mask.mgh --y > CNTRL_MCI_RAFA_stats/lh.fsgd_subj.mgh --sim perm 625 2.301 csd1 > --sim-sign pos --seed 6555731749 > > I always get the following error: > > ERROR: you must supply --fwhm with --sim, even if it is 0 > > Is there a bug in the mri_glmfit function? > > Thank you all in advance, > Rafael. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
