is anything else running on the machine? Maybe some other process was taking a bunch of memory while the gcut was running?
On Mon, 24 Jan 2011, Nick Schmansky wrote: > confirm that both T1.mgz and brainmask.auto.mgz a decent images (via > tkmedit). if they are good, then the gcut stage can be skipped by > adding the -no-gcut flag to the end of the recon-all stream, but i have > never seen this particular error occur, so i wonder about the quality of > the input. if those two files look fine, and gcut still gets killed > (which is odd), then you can send me those files via our file drop and i > can try to replicate. > > n. > On Mon, 2011-01-24 at 15:01 -0500, Michelle Umali wrote: >> Dear All, >> recon-all was killed during mri_gcut. >> >> Here is the error: >> >> mri_gcut -110 -mult brainmask.auto.mgz T1.mgz brainmask.auto.mgz >> >> Killed. >> >> How does one deal with this? >> >> Thanks in advance for any help. >> Michelle >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
