There should be an fsnr.dat file in the fsfast analysis directory with the value that you want.
doug On 12/20/10 1:30 PM, Adam Nitenson wrote: > Hello Freesurfers, > > We are beginning to perform QC on our subjects and want to look at > signal to noise ratio. I've taken a look at the fsnr.nii overlay > files, but we would like to be able to calculate a whole surface > value for SNR for each functional run of each subject, so that we can > exclude runs if that SNR values falls below our designated threshold. > Is there a way to accomplish this? > > Thanks, > > > Adam Nitenson, B.S. > Brain Genomics Lab > Massachusetts General Hospital > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
