Dear all,
Continue with my previous question in "To use the file thickness.mgh outside
Freesurfer". Thanks for Doug's recommedation to use the mri_surf2vol program to
convert mgh files into image format, such as NIFTI.
But I failed due to wrong setting on several arguments:
1, '--volreg': I do not understand what file it requires. It's declared in
--help that "Contains the matrix that maps XYZ in the reference anatomical to
XYZ in the functional volume". But I am only dealing with the structural
volumes, and has this file been created in any step during the previous
processing? Or could anyone tell me clearly how to set this argument?
2, --surfval: if only pthname rather than single file is allowed as input here?
3, --template: couldI use mni305.cor.mgz, or just left these optional arguments
empty?
thanks in advance.
Qizhu Wu
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