Dear all, Hope your research is going smoothly.
My question refers to the basal ganglai components. I previously shot an email which Prof. Fischl was kind enough to reply to: the basal ganglia is not computed as a structure of its own in FreeSurfer. These are the structures of the basal ganglia one can gather: (1) striatum (Caudate and putament) (2) Ventral Striatum - (a) nucleus accumbens (b) most ventral aspects of caudate and putament (3) Celobus pallidus (internal and external sectors) (4) Substancia Nigra (5) Subthalamic nucleus Here are my questions: => Structures (1), (2), (3) and (4) can be found... however, am having trouble locating the segmentation label number for the subthalamic nucleus. => The output for (4) is not reported in asegstats2table (while other structures are). Any other suggestions to extract the volume out? Thanks, Dhinakaran.
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