Try adding --reshape-factor 7 doug
Righart, Ruthger Dr. wrote: > Dear Freesurfers, > > I would like to map my subject thickness data to the fsaverage subject, > following ROI analyses, as described under step 4: > http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness > Before step 4, tksurfer showed me that registration from MNI to Freesurfer > space of my ROI went well! > > After that I would like to get thickness data using mri_segstats (step 5). > However, Freesurfer indicates that the dimensions of my segmentation image > (23406 x 1 x 7) are different from the dimensions of my input image (27307 x > 1 x 6), and using mri_info suggests that sth seems to have gone wrong in step > 4. I have searched in the Freesurfer archives and I understood that 23406 x 1 > x 7 are the correct dimension values and followed the advise to use --reshape > in the fourth step. This does however not change the dimensions (it still > indicates in the Freesurfer output: Reshaping 6 (nvertices = 163842) which I > guess should be Reshaping 7). > > Any suggestions to solve this problem of different dimensions are very much > appreciated! > > Best Regards, > > Ruthger Righart (PhD) > > Institute for Stroke and Dementia Research (ISD) > Klinikum der Universität München > Max-Lebsche-Platz 30 > 81377 Munich | Germany > > ruthger.righ...@med.uni-muenchen.de > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
