1. correct, or more easily, you can just run: recon-all -s <subjid> -all -nuintensitycor-3T
2. correct, there are no parameters with that flag. that flag itself adjusts the parameters to nucorrect (which will match those described in the paper linked in the release notes). let us know if it improves your results (assuming you will be comparing runs). n. On Tue, 2010-08-17 at 23:06 -0700, Mehul Sampat wrote: > Hi Folks, > I would like to use the -nuintensitycor-3T flag as listed in the > release notes (http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes) > I had two questions about this new option: > 1. Can I just use this as follows: recon-all -s bert -autorecon1 > -autorecon2 -nuintensitycor-3T (then run -autorecon3) ? > 2. I don't think there are any parameters associated with this flag. > is this correct ? > > thanks > Mehul > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
