Hi Bruce,
Yes, I can get tkregister2 to run properly, but the "moveable" image is just a single bright line. When I try to scale, translate, rotate, etc., the line will move a little bit. But it is still just a single line, instead of a volume to compare with the target image. Have you seen anything like this before? Thanks, Tricia --- On Thu, 8/12/10, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: From: Bruce Fischl <fis...@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Talairach xform problem To: "Tricia Merkley" <tmerkl...@yahoo.com> Cc: freesurfer@nmr.mgh.harvard.edu Date: Thursday, August 12, 2010, 6:34 PM Hi Tricia, when you say "to no avail" what do you mean? Have you been able to get tkregister2 to run properly? cheers Bruce On Thu, 12 Aug 2010, Tricia Merkley wrote: > Hi Freesurfers, > > Is there a solution for fixing a bad talairach transform as shown in the > attached figures? Recon-all completed without error (with the -notal-check > included, v4.5.0), and the output looks pretty good. However I'm concerned > that the 'IntraCranialVol' value will be off since it is based on the tal > xform. > > I've tried to fix it as described at > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach, but to no > avail. I'd appreciate any suggestions. > > Thanks, > Tricia > > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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