Liang, make_average_surface is not using the latest atlas when creating the .annot files. i've attached a fixed version of make_average_surface which you should copy to your $FREESURFER_HOME/bin directory.
n. On Thu, 2010-07-15 at 14:36 -0700, liang wang wrote: > Hi Doug, > > Maybe I can't give clear information about my problem in the previous > post. Please allow me report it again. > My question is that I can't find the insula in the > averaged ?h.aparc.annot obtained from the command > make_average_surface. I check ?h.aparc.annot of each subject and find > existence of the insula inside each subject's file. I don't know > what's the wrong during the average process. I am looking forward to > your suggestions. Thanks. > > Liang > > 2010/7/13 liang wang <wangl...@gmail.com> > Hi > > > > Also, when using tksurfer to > present ?h.aparc.annot, I can not find the > insula in the displayed surface, though this > region is existing in the ?h.aparc.stats and > the FreeSurferColorLUT.txt (e.g. #No. 1035 > ctx-lh-insula). I am creating a figure to show > all these ROIs. Hence I am curious why there > is not the insula shown. > What is where the insula should be? > I think that the insula should be displayed in > the ?h.aparc.annot, because ?h.aparc.stats reports several > surface measurements of this regions. But I can't find it. > > Liang > > > > -- > Liang Wang, PhD > Postdoctoral Fellow > Woodward Lab > Department of Psychiatry > University of British Columbia > BC Mental Health & Addiction Services > 938 West 28th Avenue > Vancouver BC V5Z 4H4 > Telephone: 1-604-875-2000 (ext. 4735) > Fax: 1-604-875-3871 > Email: wangl...@gmail.com > > > > > -- > Liang Wang, PhD > Postdoctoral Fellow > Woodward Lab > Department of Psychiatry > University of British Columbia > BC Mental Health & Addiction Services > 938 West 28th Avenue > Vancouver BC V5Z 4H4 > Telephone: 1-604-875-2000 (ext. 4735) > Fax: 1-604-875-3871 > Email: wangl...@gmail.com > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
make_average_surface
Description: C-Shell script
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