Hi Salem, yes, you can run any individual options in recon-all. See the -help output and run it through step 11 if you want. Note that we do use the surfaces to improve the aseg accuracy at the very end, so you'll be giving that up.
cheers Bruce On Wed, 7 Jul 2010, Hannoun wrote: > > > Hi, > > I am a new user of freesurfer. Is it possible to do just the volumetric > processing stages without the surface processing stages? > > In fact what I want is to segment the subcortical structures. > > Is there a command line for this purpose only or should we run all the > recon-all steps? > > Thank you for your help > > Salem > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
