There is no version of freesurfer being distributed by Anders Dale at UCSD.
Marty Sereno does has a version of freesurfer branched from version 0.9. His
includes a gui called csurf that can launch the retinotopy analyses (among
other things) for a single subject. In general, it is somewhat dated. For
example, it does not use mgh/mgz format, but rather a mixture of BRIK and
bfloat/bshort. The cortical surface reconstruction stream also does not have
many of the improvements made at MGH in the last several years (e.g. better
topo fixing, aseg).
I've never used it, but an advantage of the MGH freesurfer retinotopy analysis
stream is that it is documented, supported, and consistent with the latest
cortical reconstruction stream distributed with MGH freesurfer.
> Date: Thu, 10 Jun 2010 05:59:58 -0400
> From: gr...@nmr.mgh.harvard.edu
> To: francescastrapp...@gmail.com
> CC: Freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] retinotopy: MGH vs UCSD
>
>
> What do you mean by the UCSD freesurfer? A long time ago I re-wrote
> a stream that Anders was using, and it gave similar results. I've just
> re-written it again and it will be released with version 5.
>
> doug
>
>
> On Wed, 9 Jun 2010, francesca strappini wrote:
>
> > Hi all,
> > I would ask you about freesurfer and retinotopy. I'm going to begin the
> > analysis of some retinotopic data. I would ask if you know if the
> > retinotopic analysis made by MGH freesurfer is qualitatively comparable to,
> > or it's good as, that made by USCD freesurfer (old freesurfer).
> > Thank you kindly in advance.
> >
> > Francesca
> >
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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