It's hard to know without the info about scanner type
(Manufacturer/Field/Sequence) and FreeSurfer version.

I usually see 3-5% difference in measurements. Phillips 3T with common
fSPGR.
----------------------------------------------------------
Pedro Paulo de M. Oliveira Junior
Diretor de Operações
Netfilter & SpeedComm Telecom
-- For mobile: http://www.netfilter.com.br/mobile




On Thu, Jun 10, 2010 at 12:03, <bla...@artsci.wustl.edu> wrote:

> Hi All,
>
> Our group recently scanned subjects with two different scanners in order
> to determine how reliable FreeSurfer comparisons between the two scanners
> are. After putting each session through the regular cross-sectional
> Freesurfer pipeline, we noticed that there is much greater variability
> between the two scanners when we compare structures in the right
> hemisphere than in the left. Is there any FreeSurfer related reason for
> this?
>
> Also, we are currently running each subject through the longitudinal
> pipeline (i.e. Scanner 1 as TP1, Scanner 2 as TP2). Is there any reason to
> think that this will help reduce the variability seen between the two
> scanners?
>
> Thanks in advance for any help.
>
> - Tyler Blazey
>
>
>
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