Hi Dave, 001.mgz in <SUBJECT_ID>/mri/orig/ looks okay but 002.mgz looks strange, which I think is the reason for what you are seeing in T1.mgz. Did you collect 2 runs for structurals. Can you point me to the dicom files for this dataset or the scan log.
Sita. On Wed, 9 Jun 2010, Dave Brohawn wrote: > Hello, > > I keep seeing a snowy background for my T1 structural images. > > Here is my info: > > FREESURFER_HOME: /usr/local/freesurfer/stable4 > > Build stamp: freesurfer-Linux-centos4-stable-v4.5.0-20100311 > > RedHat release: CentOS release 5.3 (Final) > > Kernel info: Linux 2.6.18-128.7.1.el5 i686 > > NMR Center info (/space/freesurfer exists): > > machine: seymour > > SUBJECTS_DIR: /space/seymour/1/users/folate_subjects/ > > PWD: /space/seymour/1/users/folate_subjects > > ssh seymour > setenv SUBJECTS_DIR /space/seymour/1/users/folate_subjects/ > cd /space/seymour/1/users/folate_subjects > > > > The command I entered and one of the subjects we are seeing this with - > > tkmedit-sess -s FB0011089A -a fmcsm5_functionals -c Cond1vFix > > > Is this a problem? What can I do to fix this? > > Dave Brohawn > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
