Hi Gabriel,
that's probably what's causing the problems. Unfortunately a bunch of us
are off to HBM, so it may be a little while before we get to fix it.
Bruce
On Wed,
2 Jun 2010, Gabriel Go.Es. wrote:
Bruce, No i did not, but the acquisition was made with a voxel of 0.8^3mm,
that's why i put the -cm flag to the autorecon1, but i didn't made any other
change, is there any way to normalize the size of the image, without recon?
Thanks, Gabriel
Date: Wed, 2 Jun 2010 15:12:21 -0400
From: fis...@nmr.mgh.harvard.edu
To: gabriel...@hotmail.com
CC: ni...@nmr.mgh.harvard.edu; reu...@mit.edu; freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] autorecon2 error
Hi Gabriel,
did you do anything "nonstandard" to your aseg volume or anywhere else in
the stream? The aseg should be 256^3 1imm iso, but for some reason it's
not.
Bruce
On Wed, 2 Jun 2010, Gabriel Go.Es. wrote:
Thank you
I redownloaded the mri_ca_label file and worked, it seems that gets corrupted
when donwloading, but now it appears a new error, from
the autorecon2, any idea???
#...@# Intensity Normalization2 Wed Jun 2 14:58:57 CEST 2010
/root/trabajo/freesurfer/subjects/T1_GE1/mri
mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz
using segmentation for initial intensity normalization
reading from norm.mgz...
mri_normalize: aseg volume aseg.mgz must be conformed
using MR volume brainmask.mgz to mask input volume...
unconformed source detected - conforming...
Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT
2006 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Wed Jun 2 14:59:06 CEST 2010
Best, Gabriel
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