mri_ca_label can be downloaded from here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos4_x86_64/
copy it your $FREESURFER_HOME/bin n. On Mon, 2010-05-31 at 03:25 -0400, Martin Reuter wrote: > Yes, looks like the one I fixed. Nick can point you to a download for the > fixed files. > > Best, Martin > > > ----- Original Message ----- > From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> > To: "Gabriel Go.Es." <gabriel...@hotmail.com> > Cc: "free surfer" <freesurfer@nmr.mgh.harvard.edu>; "Reuter, Martin -- > Martin Reuter" <mreu...@nmr.mgh.harvard.edu>; "Martin Reuter" > <reu...@mit.edu> > Sent: Sunday, May 30, 2010 4:50 PM > Subject: Re: [Freesurfer] autorecon2 error > > > Hi Gabriel, > > I think Martin fixed this bug, didn't you Martin? > > Bruce > > On Sun, 30 May 2010, Gabriel Go.Es. wrote: > > > > > > > Dear FreeSurfers > > I run an autorecon1 using the flag -no-wsgcaatlas > > for skullstripping, I'm using > > freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0, you may find attached > > the recon-all_status log > > for any information you may need > > Then I was trying to run the autorecon2: recon-all -subjid -autorecon2 > > when it gives the following error message: > > > > > > ------------------------------------------------------ > > > > Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT > > 2006 x86_64 x86_64 x86_64 GNU/Linux > > > > $Id: recon-all,v 1.133.2.57 2009/08/06 18:27:48 nicks Exp $ > > > > /root/trabajo/freesurfer/bin/recon-all > > > > PWD /root/trabajo/freesurfer/subjects/MP2RAGE_2/mri > > > > CMD mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z > > /root/trabajo/freesurfer/average/RB_all_2008-03-26.gca > > aseg.auto_noCCseg.mgz > > > > > > mri_ca_label GCA sequential renormalization: label 28 not consistently > > computed. > > > > not using caudate to estimate GM means > > setting label Left_Cerebellum_Cortex based on Right_Cerebellum_Cortex = > > 1.05 x + 0 > > estimating mean gm scale to be 1.16 x + 0.0 > > estimating mean wm scale to be 1.00 x + 0.0 > > estimating mean csf scale to be 0.43 x + 0.0 > > > > saving intensity scales to aseg.auto_noCCseg.label_intensities.txt > > Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT > > 2006 x86_64 x86_64 x86_64 GNU/Linux > > > > recon-all exited with ERRORS at Fri May 28 14:57:45 CEST 2010 > > > > ------------------------------------------------------------------- > > > > > > > > any suggestions and help will be so appreciated > > > > Best > > > > Gabriel > > > > ¿Sabes que La Gente de Hoy tiene GUARDAESPALDAS contra el Spam? > > Con las alertas de Hotmail no perderás detalle de tu correo. ¡Contrátalo > > ya! > > _________________________________________________________________ > > ¿Quieres conocer trucos de Windows 7? ¡Los que ya lo usan te los cuentan! > > http://www.sietesunpueblodeexpertos.com/index_windows7.html > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
