Dear FreeSurfers I run the autorecon1 using the flag -no-wsgcaatlas for skullstripping, I'm using freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0, you may find attached the recon-all_status log for any information you may need Then I was trying to run the autorecon2: recon-all -subjid -autorecon2 when it gives the following error message:
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Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006
x86_64 x86_64 x86_64 GNU/Linux
$Id: recon-all,v 1.133.2.57 2009/08/06 18:27:48 nicks Exp $
/root/trabajo/freesurfer/bin/recon-all
PWD /root/trabajo/freesurfer/subjects/MP2RAGE_2/mri
CMD mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z
/root/trabajo/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz
mri_ca_label GCA sequential renormalization: label 28 not consistently computed.
not using caudate to estimate GM means
setting label Left_Cerebellum_Cortex based on Right_Cerebellum_Cortex = 1.05 x
+ 0
estimating mean gm scale to be 1.16 x + 0.0
estimating mean wm scale to be 1.00 x + 0.0
estimating mean csf scale to be 0.43 x + 0.0
saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT 2006
x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Fri May 28 14:57:45 CEST 2010
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any suggestions and help will be so appreciated
Best
Gabriel
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recon-all-status.log
Description: Binary data
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