Hi Michael, looks like this defect has about 60K vertices in it, which is almost have a typical surface. Something is dramatically wrong. Look at the ?h.orig and see if it includes skull or cerebellum, or if there is some huge hole/handle in the ?h.orig.nofix.
cheers Bruce On Wed, 26 May 2010, Michael Waskom wrote: > Hi, all, > > We have a recon that is failing during topology correction. Here's the > history or what's happened: > --first run through the recon-all -all pipeline went fine > --control points were added and pial edits were made for quality control > --a second recon was run with --autorecon3-cp --autorecon3 > > During the second recon, the process gets stuck for a long time in topology > correction and eventually crashes. We've tried it twice, and it crashes on > the same defect. > > Here's info from the bugr script: > > Debian version: 5.0 > > Kernel info: Linux 2.6.28-18-generic x86_64 > > recon-all log is attached. > > Any ideas? Thanks! > > Mike > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
