Thanks Krish. Unfortunately, I had seen your earlier posting about this and tried that. It hung for a long time, then produced this output:
[vantz:functional] (nmr-std-env) gzip -d fsfast-tutorial.tar.gz gzip: fsfast-tutorial.tar.gz: invalid compressed data--crc error gzip: fsfast-tutorial.tar.gz: invalid compressed data--length error > Hi Jesse > > Can you do > > gzip -d fsfast-tutorial.tar.gz > > and then do > > tar -xf fsfast-tutorial.tar > > If this works, I am guessing it might be an error of the command "tar" > itself ( how it's implemented across platforms ) > > Best > Krish > > On May 25, 2010, at 1:37 PM, Jesse Friedman wrote: > >> Thanks... I did use wget. >> >>> how did you download it? If you just used your browser, then the file >>> might have been truncated. Try using the wget command. >>> >>> doug >>> >>> Jesse Friedman wrote: >>>> Hi, >>>> >>>> I'm following instructions from: >>>> http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialData >>>> >>>> The anatomical data extracts successfully, but the functional data >>>> hangs >>>> on this command: >>>> >>>> tar xvfz fsfast-tutorial.tar.gz >>>> >>>> The process extracts files for a while and produces this output: >>>> ./fsfast-tutorial/ >>>> ./fsfast-tutorial/.xdebug_tkmedit >>>> ./fsfast-tutorial/run-fsfast-tut.log.bak >>>> ...More successful extractions... >>>> ./fsfast-tutorial/fb1-preproc-study/mgh-104.1/bold/007/f.nii >>>> ./fsfast-tutorial/fb1-preproc-study/mgh-104.1/bold/007/fmcsm5.nii >>>> tar: Skipping to next header >>>> tar: Archive contains obsolescent base-64 headers >>>> (process hangs here) >>>> >>>> Any help? I'm in >>>> /autofs/space/schnook_001/users/caitlin_tutorial/functional. bugr >>>> details >>>> are below. Thanks! >>>> >>>> Jesse >>>> >>>> FREESURFER_HOME: /usr/local/freesurfer/stable4 >>>> >>>> Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.5.0-20100311 >>>> >>>> RedHat release: CentOS release 5.3 (Final) >>>> >>>> Kernel info: Linux 2.6.18-128.7.1.el5 x86_64 >>>> >>>> NMR Center info (/space/freesurfer exists): >>>> >>>> machine: vantz >>>> >>>> SUBJECTS_DIR: /autofs/space/ventzl_001/users/SUBJECTS_DIR >>>> >>>> PWD: /space/schnook/1/users/caitlin_tutorial/functional >>>> >>>> ssh vantz >>>> setenv SUBJECTS_DIR /autofs/space/ventzl_001/users/SUBJECTS_DIR >>>> cd /space/schnook/1/users/caitlin_tutorial/functional >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> >>> >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
