It is the input data (ie, the diffusion weighted 4D "time" series) you collect from each subject, so it will be different for each subject.
doug Weisinger, Brian (NIH/OD) [E] wrote: > > > Hello, > > I am trying to run the dt_recon with the fractional anisotropy to do a > project with white matter. > I am running into a problem actually getting the command to work. I am trying > to follow the example online dt_recon --i 6-1025.dcm --s M87102113 --o dti > dt_recon --i f.nii --b f.bvals f.bvecs --s M87102113 --o dti But I am not > sure where/what I am supposed to put after the -i. The other stuff I am > pretty sure I know, --s = the subject folder --o = the folder I want the > output to go in Can you fill me in on what I'm missing, I looked in the > subjects output files and could not find anything that ended with .dcm. > > I was told that it is the input diffusion weighted time series. > > Is that something that would be different for everyone or something that > would always be the same? > If it is unique for each person where would I find that file so I > can input the name of it? > > Thank you, > > > Brian Weisinger > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
