Also re-sending my query - perhaps someone has experience with contrast adjustments
We have been doing contrast correction using mri_nu_correct.mni after > autorecon-all > (e.g., > mri_nu_correct.mni --i FS090620ll/mri/orig/001.mgz --o > FS090620ll/mri/orig/nu2.mgz --n 2). > > My question is whether after doing subsequent edits and corrections (such > as adding control points, or editing white matter) do we need to specify > nu2.mgz as the target file for the recon fix steps in the command line > (e.g., > recon-all -autorecon2-cp -autorecon3 -s FS090620ll -i FS090620ll/mri/orig/nu2.mgz > -force) > > > thanks > ilana > -- ******************************* Ilana Hairston ,PhD Research Assistant Professor 4250 Plymouth Rd. (rm 2439) Psychiatry Department, Addiction Research Center University of Michigan, Ann Arbor MI 48109-2700 Tel: 734-232-0232; Mobile: 650-906-8449 ******************** Sentimental Insomnia and Nostalgia Disorders Sciences ********************
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