Dear Freesurfers:
       i failed every time i tried to transform my dicom GE structrual images 
into mgz format, because i am quite new for this software, so i'd like to ask 
some help from you.  i will be very grateful if you can tell me what the reason 
is, or give me some suggestions on how to fix the problem.
       my command lines and the error messages are as below.
 thank you very much!
 changming
  
  
[chenchangming...@localhost ~]$ cd 
/media/12D8F3B3D8F392E9/chenchangming/20071119/csq
     [chenchangming...@localhost csq]$ cd .
[chenchangming...@localhost csq]$ ls
0001.dcm  0023.dcm  0045.dcm  0067.dcm  0089.dcm  0111.dcm  0133.dcm  0155.dcm
0002.dcm  0024.dcm  0046.dcm  0068.dcm  0090.dcm  0112.dcm  0134.dcm  0156.dcm
0003.dcm  0025.dcm  0047.dcm  0069.dcm  0091.dcm  0113.dcm  0135.dcm  0157.dcm
0004.dcm  0026.dcm  0048.dcm  0070.dcm  0092.dcm  0114.dcm  0136.dcm  0158.dcm
0005.dcm  0027.dcm  0049.dcm  0071.dcm  0093.dcm  0115.dcm  0137.dcm  0159.dcm
0006.dcm  0028.dcm  0050.dcm  0072.dcm  0094.dcm  0116.dcm  0138.dcm  0160.dcm
0007.dcm  0029.dcm  0051.dcm  0073.dcm  0095.dcm  0117.dcm  0139.dcm  0161.dcm
0008.dcm  0030.dcm  0052.dcm  0074.dcm  0096.dcm  0118.dcm  0140.dcm  0162.dcm
0009.dcm  0031.dcm  0053.dcm  0075.dcm  0097.dcm  0119.dcm  0141.dcm  0163.dcm
0010.dcm  0032.dcm  0054.dcm  0076.dcm  0098.dcm  0120.dcm  0142.dcm  0164.dcm
0011.dcm  0033.dcm  0055.dcm  0077.dcm  0099.dcm  0121.dcm  0143.dcm  0165.dcm
0012.dcm  0034.dcm  0056.dcm  0078.dcm  0100.dcm  0122.dcm  0144.dcm  0166.dcm
0013.dcm  0035.dcm  0057.dcm  0079.dcm  0101.dcm  0123.dcm  0145.dcm  0167.dcm
0014.dcm  0036.dcm  0058.dcm  0080.dcm  0102.dcm  0124.dcm  0146.dcm  0168.dcm
0015.dcm  0037.dcm  0059.dcm  0081.dcm  0103.dcm  0125.dcm  0147.dcm  0169.dcm
0016.dcm  0038.dcm  0060.dcm  0082.dcm  0104.dcm  0126.dcm  0148.dcm  0170.dcm
0017.dcm  0039.dcm  0061.dcm  0083.dcm  0105.dcm  0127.dcm  0149.dcm  0171.dcm
0018.dcm  0040.dcm  0062.dcm  0084.dcm  0106.dcm  0128.dcm  0150.dcm  0172.dcm
0019.dcm  0041.dcm  0063.dcm  0085.dcm  0107.dcm  0129.dcm  0151.dcm
0020.dcm  0042.dcm  0064.dcm  0086.dcm  0108.dcm  0130.dcm  0152.dcm
0021.dcm  0043.dcm  0065.dcm  0087.dcm  0109.dcm  0131.dcm  0153.dcm
0022.dcm  0044.dcm  0066.dcm  0088.dcm  0110.dcm  0132.dcm  0154.dcm
 
 
 
[chenchangming...@localhost ~]$ unpacksdcmdir -scanonly scan.dat -src . -targ .
 
$Id: unpacksdcmdir,v 1.19.2.2 2008/03/11 19:56:38 nicks Exp $
 
/home/chenchangmingswu
-scanonly scan.dat -src . -targ .
 
Thu Apr 29 07:05:51 EDT 2010
 
mri_convert -all-info 
ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion: $Name: 
stable4 $  TimeStamp: 2010/04/29-11:05:51-GMT  BuildTimeStamp: Aug 11 2009 
08:24:20  CVS: $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $  
User: chenchangmingswu  Machine: localhost.localdomain  Platform: Linux  
PlatformVersion: 2.6.31.5-127.fc12.i686.PAE  CompilerName: GCC  
CompilerVersion: 30400 
 
localhost.localdomain
Linux localhost.localdomain 2.6.31.5-127.fc12.i686.PAE #1 SMP Sat Nov 7 
21:25:57 EST 2009 i686 athlon i386 GNU/Linux
 
Thu Apr 29 07:05:51 EDT 2010
Log File is ./unpack.log
INFO: Logfile is ./unpack.log
SkipMoCo 0
Scanning source directory ...
INFO: summary file is ./dicomdir.sumfile
INFO: status file is ./parse.status
Scanning directory Thu Apr 29 07:05:51 EDT 2010
mri_parse_sdcmdir --sortbyrun --d . --o ./dicomdir.sumfile --status 
./parse.status
0 
Done scanning Thu Apr 29 07:05:51 EDT 2010
------------------------------------------
ERROR: no dicom files found in .
 
 
 
 
 
[chenchangming...@localhost csq]$ recon-all -force -i 
/media/12D8F3B3D8F392E9/chenchangming/20071119/csq -subjid csq
INFO: /media/12D8F3B3D8F392E9/chenchangming/fs-analysis/csq exists with -i, but 
-force specified.
Deleting any previous source volumes
Subject Stamp: freesurfer-Linux-centos4-stable-pub-v4.5.0
Current Stamp: freesurfer-Linux-centos4-stable-pub-v4.5.0
INFO: SUBJECTS_DIR is /media/12D8F3B3D8F392E9/chenchangming/fs-analysis
Actual FREESURFER_HOME /home/chenchangmingswu/software/freesurfer
-rwxrwxrwx. 1 chenchangmingswu chenchangmingswu 15854 Apr 28 12:46 
/media/12D8F3B3D8F392E9/chenchangming/fs-analysis/csq/scripts/recon-all.log
Linux localhost.localdomain 2.6.31.5-127.fc12.i686.PAE #1 SMP Sat Nov 7 
21:25:57 EST 2009 i686 athlon i386 GNU/Linux
INFO: current FREESURFER_HOME does not match that of previous processing.
    Current: /home/chenchangmingswu/software/freesurfer/
    Previous: /home/chenchangmingswu/software/freesurfer
/media/12D8F3B3D8F392E9/chenchangming/fs-analysis/csq
 
 mri_convert /media/12D8F3B3D8F392E9/chenchangming/20071119/csq 
/media/12D8F3B3D8F392E9/chenchangming/fs-analysis/csq/mri/orig/001.mgz 
 
mri_convert /media/12D8F3B3D8F392E9/chenchangming/20071119/csq 
/media/12D8F3B3D8F392E9/chenchangming/fs-analysis/csq/mri/orig/001.mgz 
corRead(): can't open file 
/media/12D8F3B3D8F392E9/chenchangming/20071119/csq/COR-.info
$Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $
reading from /media/12D8F3B3D8F392E9/chenchangming/20071119/csq...
Linux localhost.localdomain 2.6.31.5-127.fc12.i686.PAE #1 SMP Sat Nov 7 
21:25:57 EST 2009 i686 athlon i386 GNU/Linux
 
recon-all exited with ERRORS at Thu Apr 29 07:53:34 EDT 2010
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