Right, your command to see that file should be:
tkmedit bai_hong_jun orig/001.mgz
Also, it only did the first step because your command was:
recon-all -i input -s subjid
To run the entire processing stream, you'll want to do:
recon-all -all -i input -s subjid
Allison
--
On Tue, 27 Apr 2010, Bruce Fischl wrote:
Hi LJ,
don't include the "mri" on the command line (it is assumed to be under mri)
cheers
Bruce
On Tue, 27 Apr 2010, liyari5018 wrote:
hi FS experts,
FS can't recognize the file which was covert from a DICOM data in
sagital view, here is an example of failure£º
£¨see the annex for more detail £©
r...@lijin-desktop:/usr/local/freesurfer/subjects/fuzhou_test# tkmedit
bai_hong_jun mri/orig/001.mgz
ERROR: cannot find
/usr/local/freesurfer/subjects/fuzhou_test/bai_hong_jun/mri/mri/orig/001.mgz
Error: Loading volume mri/orig/001.mgz
Couldn't read the anatomical volume.
Tkmedit couldn't read the volume you specified.
This could be because the image format wasn't recognized,
or it couldn't find the proper header,
or the file(s) were unreadable,
or it was the wrong size.
how can i do to solve this problem?
thanks for your reply!
LJ
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