Hi Ryan, if you post the subject for us we'll take a look.
cheers Bruce On Fri, 16 Apr 2010 muet0...@umn.edu wrote: > Hello, > > I am getting the following error in the $subjid/scripts/recon-all.log: > > ERROR: _FindFacePath: could not find path! > Linux blade279 2.6.5-7.322-smp #1 SMP Mon Feb 8 09:14:05 UTC 2010 x86_64 > x86_64 x86_64 GNU/Linux > > recon-all exited with ERRORS at Fri Apr 16 08:23:35 CDT 2010 > > > > > The recon-all-status.log shows the process ended prematurely here: > > #...@# Fix Topology lh Fri Apr 16 04:28:28 CDT 2010 > Linux blade279 2.6.5-7.322-smp #1 SMP Mon Feb 8 09:14:05 UTC 2010 x86_64 > x86_64 x86_64 GNU/Linux > > recon-all exited with ERRORS at Fri Apr 16 08:23:35 CDT 2010 > > > > > I've tried running recon-all on this subject two separate times from > scratch, getting the same result (thinking perhaps the first time was a > random error with our system/software). The image is of good quality --- > little motion, good contrast. The brainmask.mgz and aseg.mgz look OK. The > inflated surface is very rough (lots of "spikes" coming out of it), but I > am not sure if that is just because of how early on in the processing this > is. I saw a post related to this from 2008 > (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg13371.html), > but I am not sure if the problem for that user was resolved? > > > Let me know if you have any ideas/suggestions for us to try! > > > Best, > > Ryan > > > > > > > > > Cut-and-paste the following info into your FreeSurfer problem report: > --------------------------------------------------------------------- > > FREESURFER_HOME: > /usr/local/freesurfer/freesurfer-binary-distribution/freesurfer-centos4_x86_64-stable-pub-v4.5.0/freesurfer > > Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.5.0 > > Kernel info: Linux 2.6.5-7.322-smp x86_64 > > --------------------------------------------------------------------- > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
