Thank you. I succeeded to convert it, but the label is completely incorrect. Actually, I can not understand how exactly it can work: when I make an opposite direction with mri_label2vol I pass the registrer.dat file; however, in mri_cor2label there is no such option. How then this transformation can be achieved?
On Mon, Apr 12, 2010 at 7:01 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > The id is the value in the mask. So if it's a binary mask, use --id 1 > > > > John Gelburg wrote: > >> I am sorry, but I still struggle to make it work :( >> Here is my syntax: >> mri_cor2label --i my_Analyze_mask.nii --l ./freeSurferMask.label >> I am getting "ERROR: must supply a label id" error message. >> I do not have any label id, because it's my custom mask, which was created >> in the SPM. >> >> On Fri, Apr 9, 2010 at 11:14 PM, Douglas N Greve < >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> >> It will still work. >> >> from mri_cor2label --help : >> >> Note: the name of this program is a bit misleading as it will operate >> on anything readble by mri_convert (eg, mgz, mgh, nifti, bhdr, >> analyze, etc). >> >> >> John Gelburg wrote: >> >> thanks, but isn't COR volume and my ANALYZE image is not the >> same thing? >> >> On Fri, Apr 9, 2010 at 8:02 PM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: >> >> try mri_cor2label >> >> John Gelburg wrote: >> >> Hi, >> >> I have ANLYZE binary mask which I would like to convert to >> FreeSurfer labels. Is there any more automatic way to do it >> than loading it as an overlay and then selecting >> manually as a >> label? >> >> Thanks for help, >> John >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> <mailto:Freesurfer@nmr.mgh.harvard.edu> >> <mailto:Freesurfer@nmr.mgh.harvard.edu >> <mailto:Freesurfer@nmr.mgh.harvard.edu>> >> >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> -- Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu> >> <mailto:gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.edu>> >> >> Phone Number: 617-724-2358 Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> >> FileDrop: >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> >> >> >> -- Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> Phone Number: 617-724-2358 Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > >
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