Dave, Yep, if it looks okay, just run with -notal-check. Allison --
On Wed, 17 Mar 2010, Dave Brohawn wrote: > Hello, > > I am working on unpacking a subject scanned in Bay 8 on Thursday, 3/11/2010. > > I entered recon-all -autorecon-all -s FB0011090A > > and after unpacking for approximately 45 minutes, it reported: > > > Wed Mar 17 12:52:07 EDT 2010 > talairach_avi done > #-------------------------------------------- > #...@# Talairach Failure Detection Wed Mar 17 12:52:07 EDT 2010 > /autofs/space/seymour_001/users/folate_subjects/FB0011090A/mri > > talairach_afd -T 0.005 -xfm transforms/talairach.xfm > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > ***FAILED*** (p=0.0176, pval=0.0000 < threshold=0.0050) > Linux seymour 2.6.18-128.7.1.el5 #1 SMP Mon Aug 24 08:20:55 EDT 2009 i686 > i686 i386 GNU/Linux > > recon-all exited with ERRORS at Wed Mar 17 12:52:07 EDT 2010 > > > Should I run without a talairach check if I manually look and it looks ok? > > Let me know, and thanks, > > Dave Brohawn > > > > FREESURFER_HOME: /usr/local/freesurfer/stable4 > > Build stamp: freesurfer-Linux-centos4-stable-v4.5.0-20100311 > > RedHat release: CentOS release 5.3 (Final) > > Kernel info: Linux 2.6.18-128.7.1.el5 i686 > > NMR Center info (/space/freesurfer exists): > > machine: seymour > > SUBJECTS_DIR: /space/seymour/1/users/folate_subjects/ > > PWD: /space/seymour/1/users/folate_subjects > > ssh seymour > setenv SUBJECTS_DIR /space/seymour/1/users/folate_subjects/ > cd /space/seymour/1/users/folate_subjects > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
