does the file /home/s0964091/Desktop/jan/mri/aparc.a2005s+aseg.mgz exist? Did recon-all complete properly?
On Tue, 16 Mar 2010, Janani Dhinakaran wrote: > Hello, > > With reference to this mail- Re: [Freesurfer] Extracting ROIs from > aparc.a2009s+aseg.mgzI tried introducing segments to my image > ERROR: Loading Segmentation > aparc.a2005s+aseg.mgz > Couldn't import the segmentation volume. Tkmedit wouldn't read the > segmentation you specified. This could be because the segmentation volume > wasn't a valid COR volume directory. > > > The following is what happened in the text shell. > s0964...@cric-0012:~$ tkmedit jan orig.mgz -segmentation > aparc.a2005s+aseg.mgz > ERROR: cannot find /home/s0964091/Desktop/jan/mri/aparc.a2005s+aseg.mgz > LoadSegmentationVolume main aparc.a2005s+aseg.mgz > /usr/local/freesurfer/FreeSurferColorLUT.txt > Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl > Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl > Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl > Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl > % > > So it loaded Orig but without segments. How do I rectify this? > > Thank you. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
