That command gives several options as suggestions and a format for typing in the command. Following that format I write-
mris_anatomical_stats -a jan lh.pial mris_anatomical_stats -a jan lh tkmedit mris_anatomical_stats -a jan lh tkmedit mris_anatomical_stats -a jan lh pial tkmedit mris_anatomical_stats -a jan lh.mgz tkmedit mris_anatomical_stats -a jan tkmedit mris_anatomical_stats -a jan rawavg.mgz mris_anatomical_stats -a jan left mris_anatomical_stats -a jan left cortex.mgz mris_anatomical_stats -a jan left wm.mgz None of the above give an annotation each label What should I have written? On 8 March 2010 14:31, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > Use mris_anatomical_stats > > Janani Dhinakaran wrote: > >> >> Hello all, >> >> Can anyone tell me the commands I'll need to use to extract and measure >> the cortical thickness and volume of certain regions of the brain? >> >> thanks >> -- >> I am the Sun, I know no darkness. >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > -- I am the Sun, I know no darkness.
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