That is a message from the routine that we use to automatically check the tal transform. Sometimes it is too conservative. You should check the transform manually with tkregister2. If it looks ok, then you can run recon-all with -notal-check. See http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach for more info.
doug Janani Dhinakaran wrote: > Any idea what this means and what I can do about it? > > Mon Mar 8 12:46:58 GMT 2010 > talairach_avi done > #-------------------------------------------- > #...@# Talairach Failure Detection Mon Mar 8 12:46:58 GMT 2010 > /home/s0964091/Desktop/Newdata/JS/mri > > talairach_afd -T 0.005 -xfm transforms/talairach.xfm > > ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm > ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) > Linux CRIC-0012 2.6.31-20-generic #57-Ubuntu SMP Mon Feb 8 09:02:26 > UTC 2010 x86_64 GNU/Linux > > recon-all exited with ERRORS at Mon Mar 8 12:46:58 GMT 2010 > > Thank you > Jan > -- > I am the Sun, I know no darkness. > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
