Is this what you meant: First I tried s0964...@cric-0012:~$ recon-all home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM ERROR: Flag home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM unrecognized. home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM Linux CRIC-0012 2.6.31-19-generic #56-Ubuntu SMP Thu Jan 28 02:39:34 UTC 2010 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Feb 22 14:39:27 GMT 2010 Then I tried putting full path in front of both file sets s0964...@cric-0012:~$ recon-all -i home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM/Dhinakaran^Janani^-0002-0001-00001.dcm -i home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM/Dhinakaran^Janani^-0004-0001-00001.dcm -s subj001 ERROR: cannot find home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM/Dhinakaran^Janani^-0002-0001-00001.dcm Linux CRIC-0012 2.6.31-19-generic #56-Ubuntu SMP Thu Jan 28 02:39:34 UTC 2010 x86_64 GNU/Linux recon-all exited with ERRORS at Mon Feb 22 14:41:36 GMT 2010 Jan On 22 February 2010 14:30, Xue, Feng <xfga...@gmail.com> wrote: > Try with full path, e.g. > /home/s0964091/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM > > On Mon, Feb 22, 2010 at 7:36 PM, Janani Dhinakaran > <janinthe...@gmail.com> wrote: > > Hello, > > I ran recon-all on Friday. It ran for around a minute instead of 30-48 > > hours. Unfortunately, when I try tkmedit and other such commands, the > > pictures don't visualise. > > So today I first confirmed that the SUBJECTS_DIR was in Desktop path. > > (Because over the weekend it had gone back to usr/local... path and so I > > re-exported it just now.) > > Then I tried running recon-all again. > > > > > > s0964...@cric-0012 > :~/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM$ > > echo $SUBJECTS_DIR > > Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM > > s0964...@cric-0012 > :~/Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM$ > > recon-all -i Dhinakaran^Janani^-0002-0001-00001.dcm -i > > Dhinakaran^Janani^-0004-0001-00001.dcm -s subj001 > > ERROR: SUBJECTS_DIR > > Desktop/Allimages/MRIscan/janani/CRIC-0014_5679.adb.DICOM does not exist. > > > > Can anyone help me understand what I can do? > > Thanks > > Jan > > -- > > I am the Sun, I know no darkness. > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > -- > Best Regards > > Xue, Feng Phd. candidate > Major in Developmental Cognitive Neuroscience > > National Key Laboratory of Cognitive Neuroscience and Learning > Beijing Normal University > Beijing, China. 100875 > Tel: +86-13810154455 > web: http://psychbrain.bnu.edu.cn > ============================================== > Welcome to MuDuo JinSheng BBS @ Beijing Normal University > telnet://bbs.mdjs.org > http://bbs.mdjs.org > -- I am the Sun, I know no darkness.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
