Hi Raghav, yes, people have done visualization of surfaces in matlab, maybe Thomas (ccd) can comment. As for 2, I'm not sure I understand what you mean. Why would you need to run freesurfer from within matlab? I guess you could use eval to run recon-all if you had to, but I wouldn't think you would need to.
cheers Bruce On Mon, 1 Feb 2010, Raghav Puranmalka wrote: > Hi all, > > I am working on a project that aims to: > > (1) Use an MRI image, skullstrip and convert the brain volume to a surface > > (2) Import that surface onto Matlab and visualize it there. > > (3) On top of that surface in Matlab, add pictures of electrodes as well > as 3D "heat maps" of neural activity. > > It seems that FreeSurfer may be an option for me. I have a few questions > that I have been unable to find the answers to: > > (1) Can one visualize the surface created by FreeSurface in Matlab? If > so, would somebody be able to point me to the documentation? > > (2) Can one start the freesurfer from Matlab? It seems that the matlab > files that come with freesurfer are more for reading and writing data > rather than using/starting the freesurfer binaries. > > Thanks for your help! > > Best, > > Raghav > Raghav Puranmalka > Candidate B.S. Engineering | Major: Bioengineering > Candidate M.S. Engineering | Major: Bioengineering > SEAS | University of Pennsylvania > raghav.puranma...@gmail.com > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
